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- The A.thaliana Co-Response Database -
AthCoR@CSB.DB
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NOTIFICATION: Migration to a new permanent home at wwwcsbdb.de.
Herewith we inform you that all CSB.DB databases have been migrated at the beginning of 2016. This includes all gene correlation and expression databases (search the WWW for alternatives), the GMD@CSB.DB module (alternative will be reachable via http://gmd.mpimp-golm.mpg.de/) and all associated databases (terminated).
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We thank all users, contributors, and collaborators of CSB.DB at the Max Planck Institute for their long-standing support.
Yours sincerely, the CSB.DB Curator and the CSB.DB Developmental Core Team

11500
 

Replicate Set Accession: rs_r11505
Experiment Accession11500
Replicate Set Accessionrs_r11505
Biosample Accessionbs_r11505
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionOsmotic stress (300 mM Mannitol): Mannitol was added to a concentration of 300 mM in the Media. To add the Mannitol the raft was lifted out. A magnetic stir bar was used to mix the media and the added Manitol. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 3 h after start of experiment
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11503
Experiment Accession11500
Replicate Set Accessionrs_r11503
Biosample Accessionbs_r11503
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionOsmotic stress (300 mM Mannitol): Mannitol was added to a concentration of 300 mM in the Media. To add the Mannitol the raft was lifted out. A magnetic stir bar was used to mix the media and the added Manitol. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 1 h after start of experiment
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11509
Experiment Accession11500
Replicate Set Accessionrs_r11509
Biosample Accessionbs_r11509
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionOsmotic stress (300 mM Mannitol): Mannitol was added to a concentration of 300 mM in the Media. To add the Mannitol the raft was lifted out. A magnetic stir bar was used to mix the media and the added Manitol. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 12 h after start of experiment
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11508
Experiment Accession11500
Replicate Set Accessionrs_r11508
Biosample Accessionbs_r11508
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionOsmotic stress (300 mM Mannitol): Mannitol was added to a concentration of 300 mM in the Media. To add the Mannitol the raft was lifted out. A magnetic stir bar was used to mix the media and the added Manitol. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 6 h after start of experiment.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11511
Experiment Accession11500
Replicate Set Accessionrs_r11511
Biosample Accessionbs_r11511
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionOsmotic stress (300 mM Mannitol): Mannitol was added to a concentration of 300 mM in the Media. To add the Mannitol the raft was lifted out. A magnetic stir bar was used to mix the media and the added Manitol. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 24 h after start of experiment
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11507
Experiment Accession11500
Replicate Set Accessionrs_r11507
Biosample Accessionbs_r11507
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionOsmotic stress (300 mM Mannitol): Mannitol was added to a concentration of 300 mM in the Media. To add the Mannitol the raft was lifted out. A magnetic stir bar was used to mix the media and the added Manitol. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 6 h after start of experiment
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11512
Experiment Accession11500
Replicate Set Accessionrs_r11512
Biosample Accessionbs_r11512
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionOsmotic stress (300 mM Mannitol): Mannitol was added to a concentration of 300 mM in the Media. To add the Mannitol the raft was lifted out. A magnetic stir bar was used to mix the media and the added Manitol. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 24 h after start of experiment
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11510
Experiment Accession11500
Replicate Set Accessionrs_r11510
Biosample Accessionbs_r11510
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionOsmotic stress (300 mM Mannitol): Mannitol was added to a concentration of 300 mM in the Media. To add the Mannitol the raft was lifted out. A magnetic stir bar was used to mix the media and the added Manitol. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 12 h after start of experiment
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11502
Experiment Accession11500
Replicate Set Accessionrs_r11502
Biosample Accessionbs_r11502
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionOsmotic stress (300 mM Mannitol): Mannitol was added to a concentration of 300 mM in the Media. To add the Mannitol the raft was lifted out. A magnetic stir bar was used to mix the media and the added Manitol. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 0,5 h after start of experiment
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11504
Experiment Accession11500
Replicate Set Accessionrs_r11504
Biosample Accessionbs_r11504
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionOsmotic stress (300 mM Mannitol): Mannitol was added to a concentration of 300 mM in the Media. To add the Mannitol the raft was lifted out. A magnetic stir bar was used to mix the media and the added Manitol. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 1 h after start of experiment.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11506
Experiment Accession11500
Replicate Set Accessionrs_r11506
Biosample Accessionbs_r11506
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionOsmotic stress (300 mM Mannitol): Mannitol was added to a concentration of 300 mM in the Media. To add the Mannitol the raft was lifted out. A magnetic stir bar was used to mix the media and the added Manitol. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 3 h after start of experiment
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11501
Experiment Accession11500
Replicate Set Accessionrs_r11501
Biosample Accessionbs_r11501
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionOsmotic stress (300 mM Mannitol): Mannitol was added to a concentration of 300 mM in the Media. To add the Mannitol the raft was lifted out. A magnetic stir bar was used to mix the media and the added Manitol. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 0,5 h after start of experiment
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2