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- The A.thaliana Co-Response Database -		 AthCoR@CSB.DB
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NOTIFICATION: Migration to a new permanent home at wwwcsbdb.de.
Herewith we inform you that all CSB.DB databases have been migrated at the beginning of 2016. This includes all gene correlation and expression databases (search the WWW for alternatives), the GMD@CSB.DB module (alternative will be reachable via http://gmd.mpimp-golm.mpg.de/) and all associated databases (terminated).
The BestFit software, a tool for non-aqueous fractionation data analysis, will be available by the Experimental Systems Biology Research Group headed by Dr. Patrick Giavalisco.
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11600
 

Replicate Set Accession: rs_r11605
Experiment Accession11600
Replicate Set Accessionrs_r11605
Biosample Accessionbs_r11605
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionSalt stress (150 mM NaCl): NaCl was added to a concentration of 150 mM in the Media. To add the NaCl the raft was lifted out. A magnetic stir bar and a stirrer was used to mix the media and the added NaCl. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 3 h after start of experiment
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11612
Experiment Accession11600
Replicate Set Accessionrs_r11612
Biosample Accessionbs_r11612
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionSalt stress (150 mM NaCl): NaCl was added to a concentration of 150 mM in the Media. To add the NaCl the raft was lifted out. A magnetic stir bar and a stirrer was used to mix the media and the added NaCl. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 24 h after start of experiment
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11601
Experiment Accession11600
Replicate Set Accessionrs_r11601
Biosample Accessionbs_r11601
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionSalt stress (150 mM NaCl): NaCl was added to a concentration of 150 mM in the Media. To add the NaCl the raft was lifted out. A magnetic stir bar and a stirrer was used to mix the media and the added NaCl. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 0,5 h after start of experiment
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11611
Experiment Accession11600
Replicate Set Accessionrs_r11611
Biosample Accessionbs_r11611
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionSalt stress (150 mM NaCl): NaCl was added to a concentration of 150 mM in the Media. To add the NaCl the raft was lifted out. A magnetic stir bar and a stirrer was used to mix the media and the added NaCl. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 24 h after start of experiment
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11606
Experiment Accession11600
Replicate Set Accessionrs_r11606
Biosample Accessionbs_r11606
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionSalt stress (150 mM NaCl): NaCl was added to a concentration of 150 mM in the Media. To add the NaCl the raft was lifted out. A magnetic stir bar and a stirrer was used to mix the media and the added NaCl. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 3 h after start of experiment
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11603
Experiment Accession11600
Replicate Set Accessionrs_r11603
Biosample Accessionbs_r11603
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionSalt stress (150 mM NaCl): NaCl was added to a concentration of 150 mM in the Media. To add the NaCl the raft was lifted out. A magnetic stir bar and a stirrer was used to mix the media and the added NaCl. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 1 h after start of experiment
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11609
Experiment Accession11600
Replicate Set Accessionrs_r11609
Biosample Accessionbs_r11609
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionSalt stress (150 mM NaCl): NaCl was added to a concentration of 150 mM in the Media. To add the NaCl the raft was lifted out. A magnetic stir bar and a stirrer was used to mix the media and the added NaCl. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 12 h after start of experiment
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11610
Experiment Accession11600
Replicate Set Accessionrs_r11610
Biosample Accessionbs_r11610
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionSalt stress (150 mM NaCl): NaCl was added to a concentration of 150 mM in the Media. To add the NaCl the raft was lifted out. A magnetic stir bar and a stirrer was used to mix the media and the added NaCl. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 12 h after start of experiment
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11607
Experiment Accession11600
Replicate Set Accessionrs_r11607
Biosample Accessionbs_r11607
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionSalt stress (150 mM NaCl): NaCl was added to a concentration of 150 mM in the Media. To add the NaCl the raft was lifted out. A magnetic stir bar and a stirrer was used to mix the media and the added NaCl. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 6 h after start of experiment
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11608
Experiment Accession11600
Replicate Set Accessionrs_r11608
Biosample Accessionbs_r11608
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionSalt stress (150 mM NaCl): NaCl was added to a concentration of 150 mM in the Media. To add the NaCl the raft was lifted out. A magnetic stir bar and a stirrer was used to mix the media and the added NaCl. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 6 h after start of experiment
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11602
Experiment Accession11600
Replicate Set Accessionrs_r11602
Biosample Accessionbs_r11602
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionSalt stress (150 mM NaCl): NaCl was added to a concentration of 150 mM in the Media. To add the NaCl the raft was lifted out. A magnetic stir bar and a stirrer was used to mix the media and the added NaCl. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 0,5 h after start of experiment
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11604
Experiment Accession11600
Replicate Set Accessionrs_r11604
Biosample Accessionbs_r11604
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionSalt stress (150 mM NaCl): NaCl was added to a concentration of 150 mM in the Media. To add the NaCl the raft was lifted out. A magnetic stir bar and a stirrer was used to mix the media and the added NaCl. Then the raft was put back in the box. The boxes were put back to the climate camber. Harvested 1 h after start of experiment
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2