The Comprehensive Systems Biology Project (CSB)
csbdb AthCoR@CSB.DB
- The A.thaliana Co-Response Database -
AthCoR@CSB.DB
Hosted at Max Planck Institute of Molecular Plant Physiology
Databases: Associated DB | Transcriptome DB | Metabolome DB | Co-Response DB | BestFit
Home | What's new | Search | About CSB.DB | Site Map | Mail2Us | FAQ | Help
NOTIFICATION: Migration to a new permanent home at wwwcsbdb.de.
Herewith we inform you that all CSB.DB databases have been migrated at the beginning of 2016. This includes all gene correlation and expression databases (search the WWW for alternatives), the GMD@CSB.DB module (alternative will be reachable via http://gmd.mpimp-golm.mpg.de/) and all associated databases (terminated).
The BestFit software, a tool for non-aqueous fractionation data analysis, will be available by the Experimental Systems Biology Research Group headed by Dr. Patrick Giavalisco.
We thank all users, contributors, and collaborators of CSB.DB at the Max Planck Institute for their long-standing support.
Yours sincerely, the CSB.DB Curator and the CSB.DB Developmental Core Team

10820
 

Experiment Accession: 10820
Experiment Accession10820
Project nameAtGenExpress
OrganismArabidopsis thaliana
Data SourceMax Planck Institute of Developmental Biology
Experiment Category tissue comparison
Experiment Goals developmental baseline
Experimental Variables developmental age, tissue, genotype, growth condition
Is series?time course
environment is variable?True
sample material is variable?True
probe type is variable?False
harvesting is variable?True
Experiment Namedifferent developmental stages in wild type Columbia (Col-0)
Experiment DescriptionThe activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate. The focus of this data set is on different tissues and different developmental stages in wild type Columbia (Col-0) and various mutants.
Number of Replicate Sets5
Number of BioSamples5
Number of Slides15