The Comprehensive Systems Biology Project (CSB)
csbdb Plant Subtilase Database (PSDB)
- Functional Genomics of Plant Subtilisin-like Serine Proteases -		 psdb
Hosted at CSB.DB & Altmann Lab; Information provided by TASC@PSDB
Databases: Associated DB | Transcriptome DB | Metabolome DB | Co-Response DB | BestFit
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NOTIFICATION: Permanent shutdown and termination of all CSB.DB services and functionalities by the end of 2015.
Herewith we inform you that all CSB.DB databases will be permanently shut down and associated services will be permanently terminated by the end of 2015 / beginning of 2016. This includes all gene correlation and expression databases (search the WWW for alternatives), the GMD@CSB.DB module (alternative will be reachable via http://gmd.mpimp-golm.mpg.de/) and all associated databases (terminated).
The BestFit software, a tool for non-aqueous fractionation data analysis, will be available by the Experimental Systems Biology Research Group headed by Dr. Patrick Giavalisco.
We thank all users, contributors, and collaborators of CSB.DB for their long-standing support.
Yours sincerely, the CSB.DB Curator and the CSB.DB Developmental Core Team
PSDB: Plant Subtilase Database Resources
psdb
The PSDB provides significant information on gene functions and results of experimental analyses of plant subtilisin-like serine proteases (subtilases).

To get general information about resources of the TASC and the Plant Subtilase Database use the links listed below.
Gene Information
 PSDB: Gene Information back to top
Arabidopsis thaliana subtilases
 
•
 A. thaliana: AtSBT Assignment (pdf file)
get subtilase gene assignment (pdf file)
 
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 A. thaliana: AtSBT info via agi code
get subtilase gene information of a.thaliana via agi code
 
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 A. thaliana: AtSBT info via chromosomal map
get subtilase gene information of a.thaliana via chromosomal map / distribution
Sequenc & Phylogeny
 PSDB: Sequences & Phylogenetic Relationships back to top
Arabidopsis thaliana subtilases
 
•
 A. thaliana: nucleotide & protein sequences
get nucleotide and protein sequebces of a.thaliana subtilases via gene info page
 
•
 A. thaliana: multiple alignments / distance matrices
NT dist: distance matrices obtained by pairwise global alignment of the nucleic acid sequences (pdf file)
AA dist: distance matrices obtained by pairwise global alignment of the amino acid sequences (pdf file)
 
•
 A. thaliana: phylogenetic trees
Bootstraped neighbor-joining tree generated from an alignment of the predicted 56 AtSBT full-length protein sequences (pdf file)
Bootstraped neighbor-joining tree generated from an alignment of the predicted Protease-Associated (PA) domain (pdf file)
(Co-)Expression
 PSDB: (Co-)Expression Analyses & Biostatistics back to top
Arabidopsis thaliana subtilases
 
•
 A. thaliana: localisation
get information about localization
 
•
 A. thaliana: transcriptional co-expression / co-response
get information about transcriptional co-expressed / co-responding subtilase genes
 
•
 A. thaliana: ESTs and clones
get information about available subtilase ESTs and subtilase clones
Mutants
 PSDB: Mutants back to top
Arabidopsis thaliana subtilases
 
•
 A. thaliana: KO lines and primer list
 
•
 A. thaliana: RNAi lines
Overexpressers
 PSDB: Overexpressers back to top

Contact
For suggestions and questions feel free to contact the CSB.DB curator.
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