The Comprehensive Systems Biology Project (CSB)
- A Comprehensive Systems-Biology Database -
Hosted at Max Planck Institute of Molecular Plant Physiology
Databases: Associated DB | Transcriptome DB | Metabolome DB | Co-Response DB | BestFit
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NOTIFICATION: Permanent migration of all CSB.DB services and functionalities on 1.1.2016.
Herewith we inform you that all CSB.DB databases have been migrated at the beginning of 2016. This includes all gene correlation and expression databases, the GMD@CSB.DB module and all associated databases
The BestFit software, a tool for non-aqueous fractionation data analysis, will also be available by the Experimental Systems Biology Research Group headed by Dr. Patrick Giavalisco.
We thank all users, contributors, and collaborators of CSB.DB at the Max Planck Institute for their long-standing support.
Yours sincerely, the CSB.DB Curator and the CSB.DB Developmental Core Team
Help@CSB.DB: Types of Genes
tCoR query
If you want to get help directly related to a page/query, use the Info Pages / Medium Info Pages. Direct links are available at each (Query) Page.

If you are completely lost, here is link to a short description of what CSB.DB is and is not. Enter this page.


You can get a short description of the types of genes which are allowed for the co-response gene queries by choosing the appropriate category on the list below. Gene Type Information for:
Arabidopsis thaliana

Types of Genes for Arabidopsis thalianaback to top

AGI Code: The AGI Code for the gene. Normally two letters 'At' followed by one digit number, the chromosom number, followed by the letter 'g' and by a 5-digit number.
e.g. Select the type AGI code and enter the string At1g01050.

Affymetrix ID: The Affymetrix ProbeName for the gene. Normally a 6-digit number followed by '_' and the letters 'at'. Variants like '_x_at ' are possible.
e.g. Select the type AffymetrixID and enter the string 261579_at.
Saccharomyces cerevisiae

Types of Genes for Saccharomyces cerevisiaeback to top

Sys. Gene Name: The Systematic Gene Name for the gene. Normally three letters 'Y[A-Z][A-Z]' followed by three digit number and by the strand specifier (C,W). Optinal: '-' and one additional letter can be followed. Mitochondrial genes are labeled with 'Q' followed by four digit number.
e.g. Select the type SysGeneName and enter the string YAL001C.

Gene Name: The gene name for the gene. Normally 3(2)-upper case letters followed by digits and optinal capital letter(s).
e.g. Select the type Gene Name and enter the string TFC3.
Escherichia coli

Types of Genes for Escherichia coli back to top

Blattner ID: The Blattner number for the gene. Normally the letter 'b' followed by a 4-digit number.
e.g. Select the type BlattnerID and enter the string b0006.

SwissProt ID: The SwissProt Accession number for the gene. Normally a letter ('O','P','Q') followed by a 5-digit number.
e.g. Select the type SwissProtID and enter the string P11288.

Gene Name: The current gene name for the gene. Normally 3(2)-lower case letters followed by a capital letter and optinal digits.
e.g. Select the type Gene Name and enter the string yaaA.

For suggestions and questions feel free to contact the CSB.DB curator.
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