The Comprehensive Systems Biology Project (CSB)
- A Comprehensive Systems-Biology Database -
Hosted at Max Planck Institute of Molecular Plant Physiology
Databases: Associated DB | Transcriptome DB | Metabolome DB | Co-Response DB | BestFit
Home | What's new | Search | About CSB.DB | Site Map | Mail2Us | FAQ | Help
NOTIFICATION: Permanent migration of all CSB.DB services and functionalities on 1.1.2016.
Herewith we inform you that all CSB.DB databases have been migrated at the beginning of 2016. This includes all gene correlation and expression databases, the GMD@CSB.DB module and all associated databases
The BestFit software, a tool for non-aqueous fractionation data analysis, will also be available by the Experimental Systems Biology Research Group headed by Dr. Patrick Giavalisco.
We thank all users, contributors, and collaborators of CSB.DB at the Max Planck Institute for their long-standing support.
Yours sincerely, the CSB.DB Curator and the CSB.DB Developmental Core Team
Matrices@CSB.DB: E.coli Matrix Information Page
This page provides background information about the Escherichia coli gene expression data matrices which are the basis for the co-response analyses. For further information about particular experiments follow the given link.
E.coli Matrices
To get information of your choice for the Escherichia coli gene expression data matrices use the links listed below.
Matrix asap96a : Processing

Escherichia coli - Expression Data Matrix asap96a (m96a): Processing back to top

Transcript profiles of Matrix asap96a (m96A) were derived from the ASAP database (Glasner et al., 2003) and originated from oligonucleotide microarray technology (Affymetrix). The transcript profiling experiments of asap96a (m96A) covered miscellaneous stress treatments, application of antibiotics, comparison of media and growth conditions, as well as characterisation of mutants (Allen et al., 2003). Profiles were normalized and log base 2 transformed. Matrix asap96a (m96A) comprised 16 experiments, which were described by 4345 genes (Steinhauser et al., 2004a). Normalised transcript intensities were log base 2 transformed. Co-Response analyses were performed on range normalised (genes) matrix.
For detailed description of the experiments please query the ASAP database.
Matrix asap96a: Experiments

Escherichia coli - Expression Data Matrix asap96a (m96A): Experiment List back to top

For detailed description of the experiments please query the ASAP database.
CSB.DB ID Group Experiment Description ASAP
117 2 Acid Shock, pH2, Affymetrix
123 3 Cipro20ng/ml, Affymetrix
130 5 Growth curve (2), Time 1, Affymetrix
131 Growth curve (2), Time 2, Affymetrix
132 Growth curve (2), Time 3, Affymetrix
133 Growth curve (2), Time 4, Affymetrix
150 6 wild-type, standard growth conditions, Affymetrix
160 7 Heat Shock, Affymetrix
171 4 crp (b3357)::Tn5 mutant, Affymetrix
173 cspA (b3556)::Tn5 mutant, Affymetrix
176 dps (b0812)::Tn5 mutant, Affymetrix
177 dps (b0812)::Tn5 mutant, stationary phase, Time 1, Affymetrix
178 dps (b0812)::Tn5 mutant, stationary phase, Time 2, Affymetrix
179 dps (b0812)::Tn5 mutant, stationary phase, Time 3, Affymetrix
180 hns (b1237)::Tn5 mutant, Affymetrix
182 hupB (b0440)::Tn5 mutant, Affymetrix

For suggestions and questions feel free to contact the CSB.DB curator.
Minimal resolution for optimal view: 1024x768 (without favorites)! Web browser of the sixth generation required, e.g. MS IE 6.0. Javascript must be enabled... more