The Comprehensive Systems Biology Project (CSB)
csbdb CSB.DB (CSB.DB@MPIMP)
- A Comprehensive Systems-Biology Database -
mpimp
Hosted at Max Planck Institute of Molecular Plant Physiology
Databases: Associated DB | Transcriptome DB | Metabolome DB | Co-Response DB | BestFit
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NOTIFICATION: Permanent migration of all CSB.DB services and functionalities on 1.1.2016.
Herewith we inform you that all CSB.DB databases have been migrated at the beginning of 2016. This includes all gene correlation and expression databases, the GMD@CSB.DB module and all associated databases
The BestFit software, a tool for non-aqueous fractionation data analysis, will also be available by the Experimental Systems Biology Research Group headed by Dr. Patrick Giavalisco.
We thank all users, contributors, and collaborators of CSB.DB at the Max Planck Institute for their long-standing support.
Yours sincerely, the CSB.DB Curator and the CSB.DB Developmental Core Team
Help@CSB.DB: Output (Format / Filter Selection)
tCoR query
If you want to get help directly related to a page/query, use the Info Pages / Medium Info Pages. Direct links are available at each (Query) Page.

If you are completely lost, here is link to a short description of what CSB.DB is and is not. Enter this page.

Databases@CSb.DB

You can get a short description of the threshold option at the co-response gene queries by choosing the appropriate category on the list below.
Values

Values based filter options back to top

If you select a specific sub-class of the class 'Value' you retrieve all genes associated by co-response, which meet pre-set thresholds. This thresholds are applied to the degree to which the genes are related and / or to statistic parameters. Default settings are given.

positive & p.value < 0.01 & power > 0.7: This values based sub-class can only be selected if you chosen one of the following correlation coefficients: Spearman, Pearson or Kendall. You retrieve all genes positively associated by co-response with a probability of at least 99% (p.value < 0.01) and a power of test of at least 70% (power > 0.7).

positive & best 10%: This values based sub-class is available for all types of coefficients. You retrieve all genes which are in the range of the 10% strongest positive co-responses. For correlation coefficients values near +1 will be retrieved. Distance near 0 will be retrieved for distance coefficients of into distance range converted coefficients.

positive & p.value < 0.05: This values based sub-class can only be selected if you chosen one of the following correlation coefficients: Spearman, Pearson or Kendall. You retrieve all genes positively associated by co-response with a probability of at least 95% (p.value < 0.05).

negative & p.value < 0.01 & power > 0.7: This values based sub-class can only be selected if you chosen one of the following correlation coefficients: Spearman, Pearson or Kendall. You retrieve all genes negatively associated by co-response with a probability of at least 99% (p.value < 0.01) and a power of test of at least 70% (power > 0.7).

negative & best 10%: This values based sub-class can only be seleted if yo chosen one of the correlation coefficients. You retrieve all genes which are in the range of the 10% strongest negative co-responses. Values near -1 will be retrieved.

negative & p.value < 0.05: This values based sub-class can only be selected if you chosen one of the following correlation coefficients: Spearman, Pearson or Kendall. You retrieve all genes negatively associated by co-response with a probability of at least 95% (p.value < 0.05).
Category

Category based filter optionsback to top

If you select a specific sub-class of the class 'Category' (if available) you retrieve all genes associated by co-response, which are assigned to this functional category. The functional categories are self-explanatory. Below the table you can found a graph of the normalised distribution of co-responses belonging to the individual categories.

For suggestions and questions feel free to contact the CSB.DB curator.
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