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Herewith we inform you that all CSB.DB databases have been migrated at the beginning of 2016. This includes all gene correlation and expression databases (search the WWW for alternatives), the GMD@CSB.DB module (alternative will be reachable via http://gmd.mpimp-golm.mpg.de/) and all associated databases (terminated).
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11800
 

Replicate Set Accession: rs_r11812
Experiment Accession11800
Replicate Set Accessionrs_r11812
Biosample Accessionbs_r11812
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionGenotoxic stress (bleomycin 1,5µg/ml plus mitomycin C 22µg/ml final concentration, both dissolved in water). To add the genotoxins the raft was lifted out. A magnetic stir bar was used to mix the media and the added genotoxins. Then the raft was put back in the box. The boxes were put back to the climate camber.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11804
Experiment Accession11800
Replicate Set Accessionrs_r11804
Biosample Accessionbs_r11804
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionGenotoxic stress (bleomycin 1,5µg/ml plus mitomycin C 22µg/ml final concentration, both dissolved in water). To add the genotoxins the raft was lifted out. A magnetic stir bar was used to mix the media and the added genotoxins. Then the raft was put back in the box. The boxes were put back to the climate camber.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11801
Experiment Accession11800
Replicate Set Accessionrs_r11801
Biosample Accessionbs_r11801
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionGenotoxic stress (bleomycin 1,5µg/ml plus mitomycin C 22µg/ml final concentration, both dissolved in water). To add the genotoxins the raft was lifted out. A magnetic stir bar was used to mix the media and the added genotoxins. Then the raft was put back in the box. The boxes were put back to the climate camber.
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11808
Experiment Accession11800
Replicate Set Accessionrs_r11808
Biosample Accessionbs_r11808
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionGenotoxic stress (bleomycin 1,5µg/ml plus mitomycin C 22µg/ml final concentration, both dissolved in water). To add the genotoxins the raft was lifted out. A magnetic stir bar was used to mix the media and the added genotoxins. Then the raft was put back in the box. The boxes were put back to the climate camber.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11803
Experiment Accession11800
Replicate Set Accessionrs_r11803
Biosample Accessionbs_r11803
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionGenotoxic stress (bleomycin 1,5µg/ml plus mitomycin C 22µg/ml final concentration, both dissolved in water). To add the genotoxins the raft was lifted out. A magnetic stir bar was used to mix the media and the added genotoxins. Then the raft was put back in the box. The boxes were put back to the climate camber.
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11807
Experiment Accession11800
Replicate Set Accessionrs_r11807
Biosample Accessionbs_r11807
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionGenotoxic stress (bleomycin 1,5µg/ml plus mitomycin C 22µg/ml final concentration, both dissolved in water). To add the genotoxins the raft was lifted out. A magnetic stir bar was used to mix the media and the added genotoxins. Then the raft was put back in the box. The boxes were put back to the climate camber.
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11809
Experiment Accession11800
Replicate Set Accessionrs_r11809
Biosample Accessionbs_r11809
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionGenotoxic stress (bleomycin 1,5µg/ml plus mitomycin C 22µg/ml final concentration, both dissolved in water). To add the genotoxins the raft was lifted out. A magnetic stir bar was used to mix the media and the added genotoxins. Then the raft was put back in the box. The boxes were put back to the climate camber.
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11810
Experiment Accession11800
Replicate Set Accessionrs_r11810
Biosample Accessionbs_r11810
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionGenotoxic stress (bleomycin 1,5µg/ml plus mitomycin C 22µg/ml final concentration, both dissolved in water). To add the genotoxins the raft was lifted out. A magnetic stir bar was used to mix the media and the added genotoxins. Then the raft was put back in the box. The boxes were put back to the climate camber.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11805
Experiment Accession11800
Replicate Set Accessionrs_r11805
Biosample Accessionbs_r11805
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionGenotoxic stress (bleomycin 1,5µg/ml plus mitomycin C 22µg/ml final concentration, both dissolved in water). To add the genotoxins the raft was lifted out. A magnetic stir bar was used to mix the media and the added genotoxins. Then the raft was put back in the box. The boxes were put back to the climate camber.
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11806
Experiment Accession11800
Replicate Set Accessionrs_r11806
Biosample Accessionbs_r11806
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionGenotoxic stress (bleomycin 1,5µg/ml plus mitomycin C 22µg/ml final concentration, both dissolved in water). To add the genotoxins the raft was lifted out. A magnetic stir bar was used to mix the media and the added genotoxins. Then the raft was put back in the box. The boxes were put back to the climate camber.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11811
Experiment Accession11800
Replicate Set Accessionrs_r11811
Biosample Accessionbs_r11811
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionGenotoxic stress (bleomycin 1,5µg/ml plus mitomycin C 22µg/ml final concentration, both dissolved in water). To add the genotoxins the raft was lifted out. A magnetic stir bar was used to mix the media and the added genotoxins. Then the raft was put back in the box. The boxes were put back to the climate camber.
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11802
Experiment Accession11800
Replicate Set Accessionrs_r11802
Biosample Accessionbs_r11802
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121°C; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4°C, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24°C, 50% humidity and 150 µEinstein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121°C).
Treatment DescriptionGenotoxic stress (bleomycin 1,5µg/ml plus mitomycin C 22µg/ml final concentration, both dissolved in water). To add the genotoxins the raft was lifted out. A magnetic stir bar was used to mix the media and the added genotoxins. Then the raft was put back in the box. The boxes were put back to the climate camber.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2