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- The A.thaliana Co-Response Database -		 AthCoR@CSB.DB
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NOTIFICATION: Migration to a new permanent home at wwwcsbdb.de.
Herewith we inform you that all CSB.DB databases have been migrated at the beginning of 2016. This includes all gene correlation and expression databases (search the WWW for alternatives), the GMD@CSB.DB module (alternative will be reachable via http://gmd.mpimp-golm.mpg.de/) and all associated databases (terminated).
The BestFit software, a tool for non-aqueous fractionation data analysis, will be available by the Experimental Systems Biology Research Group headed by Dr. Patrick Giavalisco.
We thank all users, contributors, and collaborators of CSB.DB at the Max Planck Institute for their long-standing support.
Yours sincerely, the CSB.DB Curator and the CSB.DB Developmental Core Team
    
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11900
 

Replicate Set Accession: rs_r11908
Experiment Accession11900
Replicate Set Accessionrs_r11908
Biosample Accessionbs_r11908
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121蚓; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4蚓, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24蚓, 50% humidity and 150 湲instein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121蚓).
Treatment DescriptionOxidative stress (10 然 Methyl viologen): Methyl viologen was added to a concentration of 10 然 in the media. To add the chemical the raft was lifted out. A magnetic stir bar and a stirrer were used to mix the media and the added methyl viologen. Then the raft was put back in the box. The boxes were put back to the climate chamber.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11905
Experiment Accession11900
Replicate Set Accessionrs_r11905
Biosample Accessionbs_r11905
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121蚓; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4蚓, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24蚓, 50% humidity and 150 湲instein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121蚓).
Treatment DescriptionOxidative stress (10 然 Methyl viologen): Methyl viologen was added to a concentration of 10 然 in the media. To add the chemical the raft was lifted out. A magnetic stir bar and a stirrer were used to mix the media and the added methyl viologen. Then the raft was put back in the box. The boxes were put back to the climate chamber.
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11912
Experiment Accession11900
Replicate Set Accessionrs_r11912
Biosample Accessionbs_r11912
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121蚓; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4蚓, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24蚓, 50% humidity and 150 湲instein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121蚓).
Treatment DescriptionOxidative stress (10 然 Methyl viologen): Methyl viologen was added to a concentration of 10 然 in the media. To add the chemical the raft was lifted out. A magnetic stir bar and a stirrer were used to mix the media and the added methyl viologen. Then the raft was put back in the box. The boxes were put back to the climate chamber.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11901
Experiment Accession11900
Replicate Set Accessionrs_r11901
Biosample Accessionbs_r11901
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121蚓; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4蚓, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24蚓, 50% humidity and 150 湲instein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121蚓).
Treatment DescriptionOxidative stress (10 然 Methyl viologen): Methyl viologen was added to a final concentration of 10 然 in the media. To add the chemical the raft was lifted out. A magnetic stir bar and a stirrer were used to mix the media and the added methyl viologen. Then the raft was put back in the box. The boxes were put back to the climate chamber.
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11907
Experiment Accession11900
Replicate Set Accessionrs_r11907
Biosample Accessionbs_r11907
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121蚓; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4蚓, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24蚓, 50% humidity and 150 湲instein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121蚓).
Treatment DescriptionOxidative stress (10 然 Methyl viologen): Methyl viologen was added to a concentration of 10 然 in the media. To add the chemical the raft was lifted out. A magnetic stir bar and a stirrer were used to mix the media and the added methyl viologen. Then the raft was put back in the box. The boxes were put back to the climate chamber.
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11910
Experiment Accession11900
Replicate Set Accessionrs_r11910
Biosample Accessionbs_r11910
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121蚓; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4蚓, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24蚓, 50% humidity and 150 湲instein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121蚓).
Treatment DescriptionOxidative stress (10 然 Methyl viologen): Methyl viologen was added to a concentration of 10 然 in the media. To add the chemical the raft was lifted out. A magnetic stir bar and a stirrer were used to mix the media and the added methyl viologen. Then the raft was put back in the box. The boxes were put back to the climate chamber.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11902
Experiment Accession11900
Replicate Set Accessionrs_r11902
Biosample Accessionbs_r11902
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121蚓; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4蚓, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24蚓, 50% humidity and 150 湲instein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121蚓).
Treatment DescriptionOxidative stress (10 然 Methyl viologen): Methyl viologen was added to a concentration of 10 然 in the media. To add the chemical the raft was lifted out. A magnetic stir bar and a stirrer were used to mix the media and the added methyl viologen. Then the raft was put back in the box. The boxes were put back to the climate chamber.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11903
Experiment Accession11900
Replicate Set Accessionrs_r11903
Biosample Accessionbs_r11903
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121蚓; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4蚓, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24蚓, 50% humidity and 150 湲instein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121蚓).
Treatment DescriptionOxidative stress (10 然 Methyl viologen): Methyl viologen was added to a concentration of 10 然 in the media. To add the chemical the raft was lifted out. A magnetic stir bar and a stirrer were used to mix the media and the added methyl viologen. Then the raft was put back in the box. The boxes were put back to the climate chamber.
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11911
Experiment Accession11900
Replicate Set Accessionrs_r11911
Biosample Accessionbs_r11911
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121蚓; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4蚓, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24蚓, 50% humidity and 150 湲instein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121蚓).
Treatment DescriptionOxidative stress (10 然 Methyl viologen): Methyl viologen was added to a concentration of 10 然 in the media. To add the chemical the raft was lifted out. A magnetic stir bar and a stirrer were used to mix the media and the added methyl viologen. Then the raft was put back in the box. The boxes were put back to the climate chamber.
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11904
Experiment Accession11900
Replicate Set Accessionrs_r11904
Biosample Accessionbs_r11904
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121蚓; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4蚓, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24蚓, 50% humidity and 150 湲instein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121蚓).
Treatment DescriptionOxidative stress (10 然 Methyl viologen): Methyl viologen was added to a concentration of 10 然 in the media. To add the chemical the raft was lifted out. A magnetic stir bar and a stirrer were used to mix the media and the added methyl viologen. Then the raft was put back in the box. The boxes were put back to the climate chamber.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11906
Experiment Accession11900
Replicate Set Accessionrs_r11906
Biosample Accessionbs_r11906
Biomaterial Descriptionseedling, roots
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121蚓; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4蚓, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24蚓, 50% humidity and 150 湲instein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121蚓).
Treatment DescriptionOxidative stress (10 然 Methyl viologen): Methyl viologen was added to a concentration of 10 然 in the media. To add the chemical the raft was lifted out. A magnetic stir bar and a stirrer were used to mix the media and the added methyl viologen. Then the raft was put back in the box. The boxes were put back to the climate chamber.
Anatomy Descriptionall roots
Development Description16 days old plants, roots
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2


Replicate Set Accession: rs_r11909
Experiment Accession11900
Replicate Set Accessionrs_r11909
Biosample Accessionbs_r11909
Biomaterial Descriptionseedling, green parts
Biomaterial Is Control?False
Growth DescriptionSeeds of Arabidopsis thaliana Wilde Type (col-0) were sown on rafts in Magenta boxes containing MS-Agar-media (MS-Agar-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); 0,5% sucrose (5g for 1L); Adjust pH to 5,7 with KOH; Add 5 g of plant Agar (Ducheva); Autoclave for 12 min at 121蚓; Poor 50 ml of media in each sterile Magenta box with ventilation). After 2 days in the cold room (4蚓, dark) the boxes were transferred to the long day chamber. Long day conditions were 16/8 hrs light/dark, 24蚓, 50% humidity and 150 湲instein/cm2 sec light intensity. At day 11 the rafts were transferred in Magenta boxes containing MS-liquid-media (MS-liquid-media (1L): 0,5x MS media + Gamborg B5 vitamins (Ducheva)(2,2g for 1L); Adjust pH to 5,7 with KOH; Poor 75 ml of media in each Magenta box without ventilation containing a floater ; Autoclave for 12 min at 121蚓).
Treatment DescriptionOxidative stress (10 然 Methyl viologen): Methyl viologen was added to a concentration of 10 然 in the media. To add the chemical the raft was lifted out. A magnetic stir bar and a stirrer were used to mix the media and the added methyl viologen. Then the raft was put back in the box. The boxes were put back to the climate chamber.
Anatomy Descriptionall green parts
Development Description16 days old plants, green parts
Probe Typetotal RNA
Germplasm NameCol-0
Germplasm TAIR Accession1092
Replicate Set Typebiological
Is Multichannel?False
Is Recerse Dye?False
Scanning SoftwareGCOS
Array DesignATH1-121501
Number Of Slides2